Publications

  1. Ni Z, Fedorova M. (2020) LipidLynxX: lipid annotations converter for large scale lipidomics and epilipidomics datasets. BioRxiv. Doi: 10.1101/2020.04.09.033894. (manuscript submitted to Bioinformatics).
  2. Coliva G, Lange M, Colombo S, Chervet JP, Domingues MR, Fedorova M. (2020) Sphingomyelins prevent propagation of lipid peroxidation – LC-MS/MS evaluation of inhibition mechanism. Molecules. Doi: 10.3390/molecules25081925.
  3. Lange M, Fedorova M.(2020) Evaluation of lipid quantification accuracy using HILIC and RPLC MS on the example of NIST® SRM® 1950 Metabolites Human Plasma. Analytical and Bioanalytical Chemistry. Doi:10.1007/s00216-020-02576-x.
  4. Ayse Tarbin Jannuzzi, Sema Arslan, Ayse Mne Yilmaz, Gulce Sari, Hande Belen, Lucia Mendez, Maria Fedorova, Kazim Yalcin Agra, Betul Karademir Yilmaz, Buket Alpertunga. (2020) Higher proteotoxic stress rather than mitochondrial damage is involved in higher neurotoxicity of bortezomib compared to carfilzomib. Redox Biology. 32: 101502.
  5. Criscuolo A, Zeller M, Fedorova M. (2020) Evaluation of lipid in-source fragmentation on different orbitrap-based mass spectrometers. Journal of American Society for Mass Spectrometry. Doi: 10.1021/jasms.9b00061.
  6. Bhandari DR, Coliva G, Fedorova M, Spengler B. (2020) Single Cell Analysis by High-Resolution Atmospheric-Pressure MALDI MS Imaging. Methods Mol Biol. 2064:103-111.
  7. Striesow J, Lackmann JW, Ni Z, Wenske S, Weltmann KD, Fedorova M, von Woedtke T, Wende K (2020) Oxidative modification of skin lipids by cold atmospheric plasma (CAP): A stanardizable approach using RP-LC/MS2 and DI-ESI/MS2. Chemistry and Physics of Lipids. 226:104786.
  8. Cruciani G, Domingues P, Fedorova M, Galli F, Spickett CM. (2019) Redox lipidomics and adductomics – Advanced analytical strategies to study oxidized lipid-protein adducts. Free Radical Biology and Medicine. 144: 1-5.
  9. Kreiter J, Rupprecht A, Zimmermann L, Moschinger M, Rokitskaya TI, ANtonenko YN, Gille L, Fedorova M, Pohl EE. (2019) Molecular mechanisms responsible for pharmacological effects of genipin on mitochondrial proteins. Biophysical Journal.117(10): 1845-1857.
  10. Ni Z, Sousa BC, Colombo S, Afonso CB, Melo T, Pitt AR, Spickett CM, Domingues P, Domingues MR, Fedorova M, Criscuolo A (2019) Evaluation of air oxidized PAPC: A multi laboratory study by LC-MS/MS. Free Radical Biology and Medicine. 144: 156-166.
  11. Colombo S, Criscuolo A, Zeller M, Fedorova M, Domingues MR, Domingues P (2019) Analysis of oxidixed and glycated aminophospholipids: Complete structural characterization by C30 liquid chromatography-high resolution tandem mass spectrometry. Free Radical Biology and Medicine. 144: 144-155.
  12. Campos-Pinto I, Mendez L, Schouten J, Wilkins J, Fedorova M, Pitt AR, Davis P, Spickett CM (2019) Epitope mapping and characterization of 4-hedroxy-2-nonenal modified-human serum albumin using two different polyclonal antibodies. Free Radical Biology and Medicine. 144: 234-244.
  13. Ni Z, Goracci L, Cruciani G, Fedorova M (2019) Computational solutions in redox lipidomics – current strategies and future perspectives. Free Radical Biology and Medicine. 144: 110-123.
  14. Criscuolo A, Zeller M, Cook K, Angelidou G, Fedorova M (2019) Rational selection of reverse phase columns for high throughput LC-MS lipidomics. Chemistry and Physics of Lipids. 221: 120-127.
  15. Coliva G, Duarte S, Perez-Sala D, Fedorova M. (2019) Impact of inhibition of the autophagy-lysosomal pathway on biomolecules carbonylation and proteome regulation in rat cardiac cells. Redox Biology. 23: 101123.
  16. Barayeu U, Lange M, Mendez L, Arnhold J, Shadyro OI, Fedorova M, Flemmig J. (2019) Cytochrome c auto-catalyzed carbonylation in the presence of hydrogen peroxide and cardiolipins. Journal of Biological Chemistry. 294 (6):1816-1830.
  17. Narzt MS, Nagelreiter IM, Oskolkova O, Bochkov VN, Latreille J, Fedorova M, Ni Z, Sialana FJ, Lubec G, Filzwieser M, Laggner M, Bilban M, Milder M, Tschachler E, Grillari J, Gruber F. (2019) A novel role for NUPR1 in the keratinocyte stress response to UV oxidized phospholipids. Redox Biology. 20:467-482.
  18. Lange M, Ni Z, Criscuolo A, Fedorova M. (2019) Liquid Chromatography Techniques in Lipidomics Research. Chromatographia. 82 (1): 77-100.
  19. Matamoros MA, Kim A, Penuelas M, Ihling C, Griesser E, Hoffmann R, Fedorova M, Frolov A, Becana M. (2018) Protein carbonylation and glycation in legume nodules. Plant Physiology. 177(4): 1510.
  20. Sultan CS, Saackel A, Stank A, Fleming T, Fedorova M, Hoffmann R, Wade RC, Hecker M, Wagner AH (2018) Impact of carbonylation on glutathione peroxidase-1 activity in human hyperglycemic endothelial cells. Redox Biology. 16:113.
  21. Ni Z, Fedorova M. (2018) Oxidized (Phospho)lipids. In Encyclopedia of Lipidomics. Springer Science+Busines Media B.V. M. Wenck (ed). doi:10.1007/978-94-007-7864-1_183-1.
  22. Colombo S, Coliva G, Kraj A, Chervet JP, Fedorova M, Domingues P, Domingues RM. (2017). Electrochemical oxidation of phosphatidylethanolamines studied by mass spectrometry. Journal of Mass Spectrometry. doi: 10.1002/jms.4056.
  23. Ni Z, Angelidou G, Hoffmann R, Fedorova M. (2017) LPPtiger software for lipidome-specific prediction and identification of oxidized phospholipids from LC-MS datasets. Scientific Reports, 7(1): 15138.
  24. Fedorova M and Zarkovic N. (2017) Preface to to the Special Issue on 4-Hydroxynonenal and Related Lipid Oxidation Products. Free Radical Biology and Medicine. 111:1.
  25. Ni Z, Angelidou G, Lange M, Hoffmann R, Fedorova M. (2017) LipidHunter Identifies Phospholipids by High-Throughput Processing of LC-MS and Shotgun Lipidomics Datasets. Analytical Chemistry89 (17): 8800–8807.
  26. Griesser E, Vemula V, Raulien N, Wagner U, Reeg S, Grune T, Fedorova M. (2017) Cross-talk between lipid and protein carbonylation in a dynamic cardiomyocyte model of mild nitroxidative stress. Redox Biology. 11: 438-455.
  27. Fedorova M. (2017). Diversity of protein carbonylation pathways: direct oxidation, glycoxidation and modifications by lipid peroxidation products. In Protein Carbonylation: Principles, Analysis, and Biological Implications, First Edition, Edited by Joaquim Ros. Publisher: John Wiley & Sons. pp 48-84.
  28. Melo T, Domingues P, Ferreira R, Milic I, Fedorova M, Santos S, Segundo M, Domingues MR. (2016). Recent Advances on Mass Spectrometry Analysis of Nitrated Phospholipids. Analytical Chemistry. 88(5):2622-9.
  29. Annibal A, Riemer T, Jovanovic O, Pohl EE, Schiller J, Hoffmann R, Fedorova M. (2016). Structural, biological and biophysical properties of glycated and glycoxidized phosphatidylethanolamines. Free Radical Biology and Medicine. 95:293-307.
  30. Milic I, Kipping M, Hoffmann R, Fedorova M. (2015). Separation and characterization of oxidized isomeric lipid-peptide adducts by ion mobility mass spectrometry. Journal of Mass Spectrometry. 50(12):1386-92.
  31. Milic I, Griesser E, Vemula V, Ieda N, Nakagawa H, Miyata N, Galano JM, Oger C, Durand T, Fedorova M. (2015). Profiling and relative quantification of multiply nitrated and oxidized fatty acids. Analytical and Bioanalytical Chemistry. 407(19):5587-602.
  32. Vemula V, Ni Z, Fedorova M. (2015). Fluorescence labeling of carbonylated lipids and proteins in cells using coumarin-hydrazide. Redox Biology. 23(5):195-204.
  33. Weber D, Ni Z, Vetter D, Hoffmann R, Fedorova M. (2015). Electrochemical oxidation of cholesterol: An easy way to generate numerous oxysterols in short reaction times. European Journal of Lipid Science. doi: 10.1002/ejlt.201500101.
  34. Ni Z, Milic I, Fedorova M. (2015). Identification of carbonylated lipids from different phospholipid classes by shotgun and LC-MS lipidomics. Analytical and Bioanalytical Chemistry. 407(17):5161-5163.
  35. Anavi S, Ni Z, Tirosh O, Fedorova M. (2015). Steatosis-induced proteins adducts with lipid peroxidation products and nuclear oxidative stress in hepatocytes. Redox Biology.4:158-168.
  36. Milic I, Melo T, Domingues MR, Domingues P, Fedorova M. (2015). Heterogeneity of peptide adducts with carbonylated lipid peroxidation products. Journal of Mass Spectrometry.50(3):603-612.
  37. Milic I, Fedorova M. (2015). Derivatization and detection of small aliphatic and lipid-bound carbonylated lipid peroxidation products by ESI-MS. Methods in Molecular Biology. Advanced Protocols in Oxidative Stress III. Humana Press. Vol.1208: 3-20.
  38. Jovanovic O, Pashkovskaya AA, Annibal A, Vazdar M, Burchardt N, Sansone A, Gille L, Fedorova M, Ferreri C, Pohl EE. (2015). The molecular mechanism behind reactive aldehyde action on transmembrane translocations of proton and potassium ions. Free Radical Biology and Medicine. 89: 1067-1076.
  39. Annibal A, Colombo G, Milzani A, Dalle-Donne I, Fedorova M, Hoffmann R. (2015). Identification of dityrosine cross-linked sites in oxidized human serum albumin. Journal of Chromatography B, Special issue “Analytical Tools and Protocols in Oxidative Stress”. 1019:147-55.
  40. Augustyniak E, Adam A, Wojdyla K, Rogowska-Wrzesinska A, Willetts R, Korkmaz A, Atalay M, Weber D, Grune T, Borsa C, Gradinaru D, Bollineni RC, Fedorova M, Griffiths HR. (2015). Validation of protein carbonyl measurement: A multi-centre study. Redox Biology. 4:149-157.
  41. Lübker C, Urbauer RJB, Moskovitz J, Dove S, Weisemann J, Fedorova M, Urbauer JL, Seifert R. (2015). Membranous adenylyl cyclase 1 activation is regulated by oxidation of N- and C-terminal methionine residues in calmodulin. Biochemical Pharmacology. 93(2):196-209.
  42. Ebner J, Aşçı Arslan A, Fedorova M, Hoffmann R, Küçükçetin A, Pischetsrieder M. (2015). Peptide profiling of bovine kefir reveals 236 unique peptides released from caseins during its production by starter culture or kefir grains. Journal of Proteomics. 117:41-57.
  43. Domingues MR, Fedorova M, Domingues P. (2015). Mass spectrometry detection of protein modification by cross-reaction with lipid peroxidation products. In Reactive Oxygen Species, Lipid Peroxidation and Protein Oxidation. Publisher: Nova Science Publisher. 61-85.
  44. Spickett CM, Fedorova M, Hoffmann R, Forman HJ. (2015). An Introduction to Redox Balance and Lipid Oxidation. In Lipid Oxidation in Health and Disease. Publishers: Taylor and Francis. 1-22.
  45. Fedorova M, Hoffmann R. (2015). Oxidized lipids as damage associated molecular patterns in inflammatory responses. In Lipid Oxidation in Health and Disease. Publishers: Taylor and Francis. 151-172.
  46. Bollineni RC, Hoffmann R, Fedorova M. (2014). Proteome-wide profiling of carbonylated proteins and carbonylation sites in HeLa cells under mild oxidative stress conditions. Free Radical Biology and Medicine. 68:186-195.
  47. Annibal A, Schubert K, Wagner U, Schiller J, Fedorova M. (2014). New covalent modifications of phosphatidylethanolamine by alkanals: mass spectrometry based structural characterization and biological effects. Journal of Mass Spectrometry. 49(7): 557-569.
  48. Bollineni RC, Fedorova M, Blüher M, Hoffmann R. (2014). Carbonylated plasma proteins as potential biomarkers of obesity induced type 2 diabetes mellitus. Journal of Proteome Research. 13(11):5081-93.
  49. D’Hondt M, Fedorova M, Peng ChY, Gevaert B, Taevernier L, Hoffmann R, De Spiegeleer B. (2014). Dry heat forced degradation of buserelin peptide: Kinetics and degradant profiling. International Journal of Pharmaceutics. 467(1-2): 48-59.
  50. Fedorova M, Bollineni RC, Hoffmann R. (2014). Protein carbonylation as a major hallmark of oxidative damage: update of analytical strategies. Mass Spectrometry Review. 33(2): 79-97.
  51. Milic I, Hoffmann R, Fedorova M. (2013). Simultaneous detection of low and high molecular weight carbonylated compounds derived from lipid peroxidation by ESI-MS/MS. Analytical Chemistry. 85(1): 156-162.
  52. Bollineni RC, Fedorova M, Hoffmann R. (2013). Qualitative and quantitative evaluation of derivatization reagents for different types of protein-bound carbonyl groups. Analyst. 138(17):5081-5088.
  53. Baum F, Fedorova M, Ebner J, Hoffmann R, Pischetsrieder M. (2013). Analysis of the endogenous peptide profile of milk: identification of 248 mainly casein-derived peptides. Journal of Proteome Research. 12(12), 5447-5462.
  54. Binelli A, Marisa I, Fedorova M, Hoffmann R, Riva C. (2013). First evidence of protein profile alteration due to the main cocaine metabolite (benzoylecgonine) in a freshwater biological model. Aquatic Toxicology. 140-141, 268-278.
  55. Cook SL, Zimmermann CM, Singer D, Fedorova M, Hoffmann R, Jackson GP. (2012). Comparison of CID, ETD and metastable atom-activated dissociation (MAD) of doubly and triply charged phosphorylated tau peptides. Journal of Mass Spectrometry. 47(6): 786-794.
  56. Todorovski T, Fedorova M, Hoffmann R. (2012). Identification of isomeric 5-hydroxytryptophan- and oxindolylalanine-containing peptides by mass spectrometry. Journal of Mass Spectrometry. 47(4): 453-459.
  57. Teuber K, Fedorova M, Hoffmann R, Schiller J. (2012). 4-Dinitrophenylhydrazine as a new reactive Matrix to analyze oxidized Phospholipids by MALDI-TOF Mass Spectrometry. Analytical Letters. 45: 968-976.
  58. Milic I, Fedorova M, Teuber K, Schiller J, Hoffmann R. (2012). Characterization of oxidation products from 1-palmitoyl-2-linoleoyl-sn-glycerophosphatidylcholine in aqueous solutions and their reactions with cysteine, histidine and lysine residues. Chemistry and Physics of Lipids. 165(2): 186-196.
  59. Todorovski T, Fedorova M, Hoffmann R. (2011). Mass spectrometric characterization of peptides containing different oxidized tryptophan residues. Journal of Mass Spectrometry. 46: 1030-1038.
  60. Bollineni RC, Hoffmann R, Fedorova M. (2011). Identification of protein carbonylation sites by two-dimensional liquid chromatography in combination with MALDI- and ESI-MS. Journal of Proteomics. 74: 2338-2350.
  61. Bollineni RC, Fedorova M, Hoffmann R. (2011). Identification of carbonylated peptides by tandem mass spectrometry using a precursor ion-like scan in negative ion mode. Journal of Proteomics. 74: 2351-2359.
  62. Ermakova II, Sakute GA, Petekhina MA, Fedorova MA, Hoffmann R, Morozov VI. (2011). Major chondroitin sulfate proteoglycans identified in L6J1 myoblast culture. Biochemistry (Mosc.). 76: 359-365.
  63. Todorovski T, Fedorova M, Henning L, Hoffmann R. (2011). Synthesis of peptides containing 5-hydroxytryptophan, oxindolylalanine, N-formylkynurenine and kynurenine. Journal of Peptide Science. 17: 256-262.
  64. Fedorova M, Frolov A, Hoffmann R. (2010). Fragmentation behavior of Amadori-peptides obtained by non-enzymatic glycosylation on lysine residues with ADP-ribose in tandem mass spectrometry. Journal of Mass Spectrometry. 45: 664-669.
  65. Fedorova M, Todorovski T, Kuleva N, Hoffmann R. (2010). Quantitative evaluation of tryptophan oxidation in actin and troponin I from skeletal muscles using a rat model of acute oxidative stress. Proteomics. 10: 2692-2700.
  66. Fedorova M, Kuleva N, Hoffmann R. (2010). Identification of cysteine, methionine and tryptophan residues of actin oxidized in vivo during oxidative stress. Journal of Proteome Research. 9: 1598-609.
  67. Fedorova M, Kuleva N, Hoffmann R. (2010). Identification, quantification and functional aspects of skeletal muscle protein-carbonylation in vivo during acute oxidative stress. Journal of Proteome Research. 9: 2516-26.
  68. Vikhoreva NN, Vikhorev PG, Fedorova MA, Hoffmann R, Mansson A, Kuleva NV. (2009). The in vitro motility assay parameters of actin filament from Mytilus edulis exposed in vivo to copper ions. Archives of Biochemistry and Biophysics. 491: 32-38.
  69. Fedorova M, Kuleva N, Hoffmann R. (2009). Reversible and irreversible modifications of skeletal muscle proteins in a rat model of acute oxidative stress. Biochimica et Biophysica Acta. 1792:1185-93.